Department of Computer Science at Allegheny College
Bonham-Carter, Oliver. Patterns and Signals of Biology: An Emphasis On The Role of Post Translational Modifications in Proteomes for Function and Evolutionary Progression. Diss. University of Nebraska at Omaha, 2016.
Bonham-Carter, Oliver, Joe Steele, and Dhundy Bastola. "Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis." Briefings in bioinformatics 15.6 (2014): 890-905.
O. Bonham-Carter, J. Pedersen, and D. Bastola, "A Content and Structural Assessment of Oxidative Motifs Across a Diverse Set of Life Forms." Computers in Biology and Medicine, 2014.
Bonham-Carter, Oliver, Jay Pedersen, and Dhundy Bastola. "A content and structural assessment of oxidative motifs across a diverse set of life forms." Computers in biology and medicine 53 (2014): 179-189.
O. Bonham-Carter, H. Ali, and D. Bastola, "A base composition analysis of natural patterns for the preprocessing of metagenome sequences." BMC Bioinformatics, 2013.
Boman, B. M., Fields, J. Z., Bonham-Carter, O., Runquist, O. A. "Computer modeling implicates stem cell overproduction in colon cancer initiation." Cancer research, 2001
Conferences and Workshops:
Bonham-Carter, Oliver, and Thu, Yee Mon. GenExSt: A Tool to Identify Correlation of Gene Expression after Normalization with Housekeeping Genes. Springer, Cham, 2021.
Bonham-Carter, Oliver. "BeagleTM: An Adaptable Text Mining Method for Relationship Discovery in Literature." Future of Information and Communication Conference. Springer, Cham, 2020.
Bonham-Carter, Oliver, and Yee Mon Thu. "Systematic Normalization with Multiple Housekeeping Genes for the Discovery of Genetic Dependencies in Cancer." bioRxiv (2020).
O. Bonham-Carter, and D. R. Bastola. "PTM Tracker: A system for determining trends of PTM modification sites relative to protein domains." 2016 IEEE International Conference on Electro Information Technology (EIT). IEEE, 2016.
O. Bonham-Carter and D. R. Bastola, "A text mining application for linking functionally stressed-proteins to their post-translational modifications", IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2015
M. Camara, O. Bonham-Carter, and J. Jumadinova, "A Multi-Agent System with Reinforcement Learning Agents for Biomedical Text Mining", ACM-BCB 2015
O. Bonham-Carter, I. Thapa, and D. Bastola, "Evidence of post translational modification bias extracted from the tRNA and corresponding amino acid interplay across a set of diverse organisms." In the Proceedings of the 8th International Workshop on Biomolecular Network Analysis (IWBNA) at ACM-BCB 2014.
O. Bonham-Carter, J. Pedersen, L. Najjar, D. Bastola, "Modeling the Effects of Microgravity On Oxidation in Mitochondria: A Protein Damage Assessment Across a Diverse Set of Life Forms." In the Proceedings of the IEEE ICDM Workshop on Data Mining in Biomedical Informatics and Healthcare, DMBIH 2013.
O. Bonham-Carter, L. Najjar, and D. Bastola, "Evidence of a Pathway of Reduction in Bacteria: Reduced Quantities of Restriction Sites Impact tRNA Activity in a Trial Set." In the Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, BCB 2013.
O. Bonham-Carter, A. Parakh, and D. Bastola, "sEncrypt: An Encryption Algorithm Inspired From Biological Processes," Proceedings of the 12th IEEE International Conference on Trust, Security and Privacy in Computing and Communications, TrustCom 2012.
O. Bonham-Carter, H. Ali, and D. Bastola, "A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition," Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012.
O. Bonham-Carter, L. Najjar, I. Thapa and D. Bastola, "Distributions of Palindromic Proportional Content in Bacteria," In the Proceedings of the 8th International Symposium on Bioinformatics Research and Applications, ISBRA 2012.